20.1.1 Medical Applications, Microscope Image Analysis, Electron Microscope

Chapter Contents (Back)
Microscope.

Bartels, P.H., Gahm, T., Thompson, D.,
Automated Microscopy in Diagnostic Histopathology: From Image-Processing to Automated Reasoning,
IJIST(8), No. 2, 1997, pp. 214-223. 9704
BibRef

Von Wegner, F., Both, M., Fink, R.H.A., Friedrich, O.,
Fast XYT Imaging of Elementary Calcium Release Events in Muscle With Multifocal Multiphoton Microscopy and Wavelet Denoising and Detection,
MedImg(26), No. 7, July 2007, pp. 925-934.
IEEE DOI Link 0707
BibRef

Yeom, S., Moon, I, Javidi, B.,
Real-Time 3-D Sensing, Visualization and Recognition of Dynamic Biological Microorganisms,
PIEEE(94), No. 3, March 2006, pp. 550-566.
IEEE DOI Link 0603
BibRef

Cortés, L.[Leandro], Amit, Y.[Yali],
Efficient Annotation of Vesicle Dynamics Video Microscopy,
PAMI(30), No. 11, November 2008, pp. 1998-2010.
IEEE DOI Link 0809
BibRef

Bodvarsson, B., Klim, S., Morkebjerg, M., Mortensen, S., Yoon, C.H., Chen, J., Maclaren, J.R., Luther, P.K., Squire, J.M., Bones, P.J., Millane, R.P.,
A morphological image processing method for locating myosin filaments in muscle electron micrographs,
IVC(26), No. 8, 1 August 2008, pp. 1073-1080.
WWW Version. 0806
Image analysis; Morphology; Electron micrograph; Disorder; Myosin; Muscle BibRef

Begelman, G., Zibulevsky, M., Rivlin, E., Kolatt, T.,
Blind Decomposition of Transmission Light Microscopic Hyperspectral Cube Using Sparse Representation,
MedImg(28), No. 8, August 2009, pp. 1317-1324.
IEEE DOI Link 0909
BibRef

Begelman, G.[Grigory], Pechuk, M.[Michael], Rivlin, E.[Ehud], Sabo, E.[Edmond],
System for Computer-Aided Multiresolution Microscopic Pathology Diagnostics,
CVS06(16).
IEEE DOI Link 0602
BibRef

Maurer, M.R.[Mauricio Rafael], Pedrini, H.[Helio], Ferreira Randi, M.A.[Marco Antonio],
Processing and Visualization of Light Microscope Images,
IJIG(9), No. 3, July 2009, pp. 369-388.
WWW Version. 0911
BibRef

Calapez, A., Rosa, A.,
A Statistical Pixel Intensity Model for Segmentation of Confocal Laser Scanning Microscopy Images,
IP(19), No. 9, September 2010, pp. 2408-2418.
IEEE DOI Link 1008
BibRef

Roberts, T.J.[Timothy J.], McKenna, S.J.[Stephen J.], Du, C.J.[Cheng-Jin], Wuyts, N.[Nathalie], Valentine, T.A.[Tracy A.], Bengough, A.G.[A. Glyn],
Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images,
MVA(21), No. 6, October 2010, pp. 921-939.
WWW Version. 1011
BibRef

Díaz, M.E.[María Elena], Ayala, G.[Guillermo], Díaz, E.[Ester],
Estimating the Duration of Overlapping Events from Image Sequences Using Cylindrical Temporal Boolean Models,
JMIV(38), No. 2, October 2010, pp. 83-94.
WWW Version. 1011
Cell biology, microscope analysis. BibRef

Kenig, T.[Tal], Kam, Z.[Zvi], Feuer, A.[Arie],
Blind Image Deconvolution Using Machine Learning for Three-Dimensional Microscopy,
PAMI(32), No. 12, December 2010, pp. 2191-2204.
IEEE DOI Link 1011
for microscopic image enhancement. BibRef

Lee, S.H.[Seung-Hee], Doerschuk, P.C., Johnson, J.E.,
Multiclass Maximum-Likelihood Symmetry Determination and Motif Reconstruction of 3-D Helical Objects From Projection Images for Electron Microscopy,
IP(20), No. 7, July 2011, pp. 1962-1976.
IEEE DOI Link 1107
BibRef

Prust, C.J., Doerschuk, P.C., Johnson, J.E.,
3-D Reconstructions of Tailed Bacteriophages from CYRO Electron Microscopy Images,
ICIP06(917-920).
IEEE DOI Link 0610
BibRef

Akselrod-Ballin, A., Bock, D., Reid, R.C., Warfield, S.K.,
Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy,
MedImg(30), No. 7, July 2011, pp. 1427-1438.
IEEE DOI Link 1107
BibRef

Wang, Z., Millet, L.J., Mir, M., Ding, H., Unarunotai, S., Rogers, J.A., Gillette, M.U., Popescu, G.,
Spatial light interference microscopy (SLIM),
OptExp(19), No. 2, 2011, pp. 1016.
WWW Version.
WWW Version. 1109
BibRef

Babacan, D., Wang, Z., Do, M., opescu, G.,
Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy,
BioOptExp(2), No. 7, 2011.
WWW Version. 1109
BibRef

Pham, H., Ding, H., Sobh, N., Do, M., Patel, S., opescu, G.,
Off-axis quantitative phase imaging processing using CUDA: Toward real-time applications,
BioOptExp(2), No. 7, 2011.
WWW Version. 1109
BibRef

Lucchi, A., Smith, K., Achanta, R., Knott, G., Fua, P.,
Supervoxel-Based Segmentation of Mitochondria in EM Image Stacks With Learned Shape Features,
MedImg(31), No. 2, February 2012, pp. 474-486.
IEEE DOI Link 1202
Electron Microscope BibRef

Esposito, A.,
Beyond Range: Innovating Fluorescence Microscopy,
RS(4), No. 1, January 2012, pp. 111-119.
WWW Version.
WWW Version. 1203
BibRef

Chu, K.[Kaiqin], Smith, Z.J.[Zachary J.], Wachsmann-Hogiu, S.[Sebastian], Lane, S.[Stephen],
Super-resolved spatial light interference microscopy,
JOSA-A(29), No. 3, March 2012, pp. 344-351.
WWW Version. 1203
BibRef

Temerinac-Ott, M., Ronneberger, O., Ochs, P., Driever, W., Brox, T., Burkhardt, H.,
Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy,
IP(21), No. 4, April 2012, pp. 1863-1873.
IEEE DOI Link 1204
BibRef

Loménie, N.[Nicolas], Racoceanu, D.[Daniel],
Point set morphological filtering and semantic spatial configuration modeling: Application to microscopic image and bio-structure analysis,
PR(45), No. 8, August 2012, pp. 2894-2911.
Elsevier DOI Link
WWW Version. 1204
Shape analysis; Mesh analysis; Unorganized point set; Spatial relation modeling; Mathematical morphological operator; Image exploration; Graph representation; Semantic query; Visual reasoning; Digital histopathology BibRef


Altinay, D., Bradley, A.P.,
An Evaluation of Multi-resolution Microscope Slide Scanning Algorithms,
DICTA11(319-324).
IEEE DOI Link 1205
BibRef

Pietschmann, J.F.[Jan-Frederik], Schlake, B.[Barbel],
Lane formation in a microscopic model and the corresponding partial differential equation,
MSVALC11(173-179).
IEEE DOI Link 1201
BibRef

Kim, H.C.[Hee-Chang], Stamon, G.[Georges], Genovesio, A.[Auguste],
A method for discontinuous neurite reconstruction based on diffusion tensor, Hessian eigenvector, and diffused gradient vector fields,
ICIP11(1401-1404).
IEEE DOI Link 1201
BibRef

Burton, D.R., Murphy, M.F., Lilley, F., Gdeisat, M.A.,
The formulation of a non-linear hertzian model in order to assess the mechanical strength of human cells based on data from an atomic force microscope,
ICIP11(3061-3064).
IEEE DOI Link 1201
BibRef

Ahtaiba, A., Gdeisat, M.A., Burton, D.R., Lilley, F., Murphy, M.F., Johnston, G.,
A novel technique for the restoration of atomic force microscope images enabling an approximation of AFM impulse response,
ICIP11(3065-3068).
IEEE DOI Link 1201
BibRef

Johnston, G., Burton, D.R., Lilley, F., Doyle, A., Murphy, M.F., Madden, G., Gdeisat, M.A., Moore, C.J., Marchant, T., Matuszewski, B.,
Analysis of microscopy and reconstructive images for applications in medicine and biology,
ICIP11(3069-3072).
IEEE DOI Link 1201
BibRef

Meziou, L., Histace, A., Precioso, F., Matuszewski, B.J., Murphy, M.F.,
Confocal microscopy segmentation using active contour based on alpha(?)-divergence,
ICIP11(3077-3080).
IEEE DOI Link 1201
BibRef

Pop, S.[Sorin], Dufour, A.[Alexandre], Olivo-Marin, J.C.[Jean-Christophe],
Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy,
ICIP11(2041-2044).
IEEE DOI Link 1201
BibRef

Makkapati, V.V.[Vishnu V.], Pathangay, V.,
Adaptive Color Illumination for Microscopes,
NCC11(1-5).
IEEE DOI Link BibRef 1100

Yang, H.F.[Huei-Fang], Choe, Y.[Yoonsuck],
An Interactive Editing Framework for Electron Microscopy Image Segmentation,
ISVC11(I: 400-409).
Springer DOI Link 1109
BibRef

Smochina, C.[Cristian], Manta, V.[Vasile], Kropatsch, W.G.[Walter G.],
Semantic Segmentation of Microscopic Images Using a Morphological Hierarchy,
CAIP11(I: 102-109).
Springer DOI Link 1109
BibRef

Papa, J.P.[João P.], Pereira, C.R.[Clayton R.], de Albuquerque, V.H.C.[Victor H.C.], Silva, C.C.[Cleiton C.], Falcão, A.X.[Alexandre X.], Tavares, J.M.R.S.[João Manuel R.S.],
Precipitates Segmentation from Scanning Electron Microscope Images through Machine Learning Techniques,
IWCIA11(456-468).
Springer DOI Link 1105
BibRef

Lalys, F.[Florent], Riffaud, L.[Laurent], Morandi, X.[Xavier], Jannin, P.[Pierre],
Surgical Phases Detection from Microscope Videos by Combining SVM and HMM,
MCV10(54-62).
Springer DOI Link 1009
BibRef

Altinay, D.[Doreen], Bradley, A.P.[Andrew P.], Mehnert, A.J.H.[Andrew J.H.],
On the Estimation of Extrinsic and Intrinsic Parameters of Optical Microscope Calibration,
DICTA10(190-195).
IEEE DOI Link 1012
BibRef

Yang, H.F.[Huei-Fang], Choe, Y.S.[Yoon-Suck],
Ground Truth Estimation by Maximizing Topological Agreements in Electron Microscopy Data,
ISVC11(I: 371-380).
Springer DOI Link 1109
BibRef
Earlier:
Electron Microscopy Image Segmentation with Graph Cuts Utilizing Estimated Symmetric Three-Dimensional Shape Prior,
ISVC10(II: 322-331).
Springer DOI Link 1011
BibRef

Suksmono, A.B.[Andriyan B.], Hirose, A.[Akira],
Numerical reconstruction of holographic microscopy images based on matching pursuits on a pair of domains,
ICIP10(4197-4200).
IEEE DOI Link 1009
BibRef

Ciomaga, A.[Adina], Monasse, P.[Pascal], Morel, J.M.[Jean Michel],
Level lines shortening yields an image curvature microscope,
ICIP10(4129-4132).
IEEE DOI Link 1009
BibRef

Zhang, X.[Xin], Lam, E.Y.[Edmund Y.],
Edge detection of three-dimensional objects by manipulating pupil functions in an optical scanning holography system,
ICIP10(3661-3664).
IEEE DOI Link 1009
BibRef

Wortmann, T.[Tim], Fatikow, S.[Sergej],
Carbon Nanotube Detection by Scanning Electron Microscopy,
MVA09(370-).
PDF Version. 0905
BibRef

Gibert, J.[Jaume], Valveny, E.[Ernest], Bunke, H.[Horst],
Vocabulary Selection for Graph of Words Embedding,
IbPRIA11(216-223).
Springer DOI Link 1106
BibRef
Earlier:
Dimensionality Reduction for Graph of Words Embedding,
GbRPR11(22-31).
Springer DOI Link 1105
BibRef
Earlier:
Graph of Words Embedding for Molecular Structure-Activity Relationship Analysis,
CIARP10(30-37).
Springer DOI Link 1011
Discovering chemical activity of molecular compounds based on their structure. See also Recursive Embedding Approach to Median Graph Computation, A. BibRef

Díaz, G.[Gloria], Romero, E.[Eduardo],
Histopathological Image Classification Using Stain Component Features on a pLSA Model,
CIARP10(55-62).
Springer DOI Link 1011
BibRef

Usenik, P.[Peter], Vrtovec, T.[Tomaz], Pernus, F.[Franjo], Likar, B.[Bostjan],
Automated Tracking of Vesicles in Phase Contrast Microscopy Images,
ICPR10(2520-2523).
IEEE DOI Link 1008
BibRef

Kemmler, M.[Michael], Denzler, J.[Joachim], Rösch, P.[Petra], Popp, J.[Jürgen],
Classification of Microorganisms via Raman Spectroscopy Using Gaussian Processes,
DAGM10(81-90).
Springer DOI Link 1009
BibRef

Mele, K.[Katarina], Coster, A.[Adelle], Burchfield, J.G.[James G.], Lopez, J.[Jamie], James, D.E.[David E.], Hughes, W.E.[William E.], Vallotton, P.[Pascal],
Automatic identification of fusion events in TIRF microscopy image sequences,
ObjectEvent09(578-584).
IEEE DOI Link 0910
BibRef

Adeyemi, A.A., Darcie, T.E.,
Programmable Point-Source Digital In-Line Holographic Microscope with Enhanced Field of View,
CISP09(1-4).
IEEE DOI Link 0910
BibRef

Marim, M.M.[Marcio M.], Angelini, E.D.[Elsa D.], Olivo-Marin, J.C.,
Compressed Sensing in microscopy with random projections in the Fourier domain,
ICIP09(2121-2124).
IEEE DOI Link 0911
BibRef

Lorenz, K.S.[Kevin S.], Serrano, F.[Francisco], Salama, P.[Paul], Delp, E.J.[Edward J.],
Segmentation and registration based analysis of microscopy images,
ICIP09(4213-4216).
IEEE DOI Link 0911
BibRef

Wurflinger, T.[Thomas], Sechi, A.S.[Antonio S.], Aach, T.[Til],
Segmentation, tracking, and analysis of focal adhesion dynamics in cellular microscopy imaging,
ICIP09(4209-4212).
IEEE DOI Link 0911
BibRef

Zhao, Y.[Yang], Xiong, H.[Hongkai], Zhang, K.[Kai], Zhou, X.B.[Xiao-Bo],
Equilibrium modeling for 3D curvilinear structure tracking of confocal microscopy images,
ICIP09(2533-2536).
IEEE DOI Link 0911
BibRef

Misiak, D.[Danny], Posch, S.[Stefan], Stohr, N.[Nadine], Huttelmaier, S.[Stefan], Moller, B.[Birgit],
Automatic analysis of flourescence labeled neurites in microscope images,
WACV09(1-7).
IEEE DOI Link 0912
BibRef

Rong, W.[Wen], Chen, H.[Hui], Liu, J.J.[Jia-Ju], Xu, Y.Y.[Yan-Yan], Haeusler, R.,
Mosaicing of microscope images based on SURF,
IVCNZ09(271-275).
IEEE DOI Link 0911
BibRef

Zhang, H.Z.[Huai-Zhong], Rodriguez, E.P.[E. Patricia], Morrow, P.J.[Philip J.], McClean, S.[Sally], Saetzler, K.[Kurt],
MCMC-Based Algorithm to Adjust Scale Bias in Large Series of Electron Microscopical Ultrathin Sections,
CAIP09(557-564).
Springer DOI Link 0909
BibRef

Zhang, H.Z.[Huai-Zhong], Morrow, P.J.[Philip J.], McClean, S.[Sally], Saetzler, K.[Kurt],
Contour Detection of Labelled Cellular Structures from Serial Ultrathin Electron Microscopy Sections using GAC and Prior Analysis,
IPTA08(1-7).
IEEE DOI Link 0811
BibRef

Vazquez, Y., Bravo, A., Mantilla, J., Alayon, M.,
Automatic Approach for Emulsions Stability Assessment in Microscope Images,
DICTA08(162-167).
IEEE DOI Link 0812
BibRef

Hamey, L.G.C.[Leonard G. C.], Connally, R.E.[Russell E.], Yen, S.W.T.[Simon Wong Too], Lawson, T.S.[Thomas S.], Piper, J.A.[James A.], Iredell, J.[Jon],
Luminescent Microspheres Resolved from Strong Background on an Automated Time-Gated Luminescence Microscopy Workstation,
DICTA09(223-228).
IEEE DOI Link 0912
BibRef

Alexander, S.K., Azencott, R., Bodmann, B.G., Bouamrani, A., Chiappini, C., Ferrari, M., Liu, X., Tasciotti, E.,
SEM Image Analysis for Quality Control of Nanoparticles,
CAIP09(590-597).
Springer DOI Link 0909
SEM: scanning electronic microscopy. BibRef

Tsaftaris, S.A., Zujovic, J., Katsaggelos, A.K.,
Automated line flattening of Atomic Force Microscopy images,
ICIP08(2968-2971).
IEEE DOI Link 0810
BibRef

Karlsson, A.[Adam], Overgaard, N.C.[Niels C.], Heyden, A.[Anders],
A Two-Step Area Based Method for Automatic Tight Segmentation of Zona Pellucida in HMC Images of Human Embryos,
ScaleSpace05(503-514).
WWW Version. 0505
BibRef
And:
Automatic segmentation of Zona pellucida in HMC images of human embryos,
ICPR04(III: 518-521).
IEEE DOI Link 0409
Hoffman modulation contrast microscopy BibRef

van Kempen, G.M.P., van den Brink, N., van Vliet, L.J., van Ginkel, M., Verbeek, P.W., Blonk, H.,
The Application of a Local Dimensionality Estimator to the Analysis of 3-D Microscopic Network Structures,
SCIA99(Biological Applications II). BibRef 9900

Brugal, G.,
Pattern recognition, image processing, related data analysis and expert systems integrated in medical microscopy,
ICPR88(I: 286-293).
IEEE DOI Link 8811
BibRef

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Medical Image Analysis, Special Issues, Introductions, Special Sections .


Last update:May 16, 2012 at 20:31:07