20.4.1 Chromosome Analysis and Extraction

Paton, K.,
Conic sections in chromosome analysis,
PR(2), No. 1, January 1970, pp. 39-40.
WWW Version. 0309
BibRef

Lee, E.T.,
The shape-oriented dissimilarity of polygons and its application to the classification of chromosome images,
PR(6), No. 1, June 1974, pp. 47-60.
WWW Version. 0309
BibRef

Vanderheydt, L., Oosterlinck, A., van Daele, J., van den Berghe, H.,
Design of a graph-representation and a fuzzy-classifier for human chromosomes,
PR(12), No. 3, 1980, pp. 201-210.
WWW Version. 0309
BibRef

Vanderheydt, L., Dom, F., Oosterlinck, A., van den Berghe, H.,
Two-dimensional shape decomposition using fuzzy subset theory applied to automated chromosome analysis,
PR(13), No. 2, 1981, pp. 147-157.
WWW Version. 0309
BibRef

Nickolls, P., Piper, J., Rutovitz, D., Chisholm, A., Johnstone, I., Robertson, M.,
Pre-processing of images in an automated chromosome analysis system,
PR(14), No. 1-6, 1981, pp. 219-229.
WWW Version. 0309
BibRef

Lundsteen, C.[Claes], Gerdes, T.[Tommy], Philip, K.[Kim],
A model for selection of attributes for automatic pattern recognition. Stepwise data compression monitored by visual classification,
PR(15), No. 3, 1982, pp. 243-251.
WWW Version. 0309
Based on a pattern recognition study of human chromosomes a model is proposed for selection of attributes for automatic pattern recognition. BibRef

Harms, H., Gunzer, U., Aus, H.M.,
Combined Local Color and Texture Analysis of Stained Cells,
CVGIP(33), No. 3, March 1986, pp. 364-376.
WWW Version. BibRef 8603

Gallus, G., Neurath, P.W.,
Improved Computer Chromosome Analysis Incorporating Preprocessing and Boundary Analysis,
Physics in Med. and Bio.(15), No. 3, 1970, p0p. 435-445. BibRef 7000

Klinger, A., Kochman, A., Alexandridis, N.A.,
Computer Analysis of Chromosome Patterns,
TC(20), No. 9, September 1971, ppp. 1014. BibRef 7109

Onoe, M., Takagi, M., Yukimatsu, K.,
Chromosome Analysis by Minicomputer,
CGIP(2), 1973, pp. 402-416. BibRef 7300

Granlund, G.H.,
Statistical Analysis of Chromosome Characteristics,
PR(6), No. 2, October 1974, pp. 115-126.
WWW Version. BibRef 7410

Tso, M.K.S., Graham, J.,
The Transformation Algorithm as an Aid to Chromosome Classification,
PRL(1), 1983, pp. 489-496. BibRef 8300

Piper, J., Granum, E., Rutovitz, D., Ruttledge, H.,
Automation of Chromosome Analysis,
SP(2), 1980, pp. 203-221. BibRef 8000

Piper, J.,
Classification of Chromosomes Contrained by Expected Class Size,
PRL(4), 1986, pp. 391-395. BibRef 8600

Piper, J., Rutovitz, D.,
A Parallel Processor Implementation of a Chromosome Analysis System,
PRL(4), 1986, pp. 397-404. BibRef 8600

Ji, L.[Liang],
Intelligent splitting in the chromosome domain,
PR(22), No. 5, 1989, pp. 519-532.
WWW Version. 0309
BibRef

He, L.[Liang], Chai, Z.M.[Zhen-Ming],
A new method of automatic SCE detection,
PR(23), No. 1-2, 1990, pp. 95-97.
WWW Version. 0401
sister chromatid exchange. BibRef

Turner, M., Austin, J., Allinson, N.M., Thompson, P.,
Chromosome location and feature extraction using neural networks,
IVC(11), No. 4, May 1993, pp. 235-239.
WWW Version. 0401
BibRef

Lerner, B., Guterman, H., Dinstein, I., Romem, Y.,
Medial Axis Transform-Based Features and a Neural-Network for Human-Chromosome Classification,
PR(28), No. 11, November 1995, pp. 1673-1683.
WWW Version. Medial Axis Transform. BibRef 9511

Dougherty, E.R., Chen, Y.D., Waks, A.,
Bayesian Morphological Peak Estimation and Its Application to Chromosome Counting Via Fluorescence in-Situ Hybridization,
PR(29), No. 6, June 1996, pp. 987-996.
WWW Version. 9606
BibRef

Ritter, G.[Gunter], Gallegos, M.T.[María Teresa], Gaggermeier, K.[Karl],
Automatic context-sensitive karyotyping of human chromosomes based on elliptically symmetric statistical distributions,
PR(28), No. 6, June 1995, pp. 823-831.
WWW Version. 0401
BibRef

Ritter, G., Gallegos, M.T.,
Outliers in Statistical Pattern Recognition and an Application to Automatic Chromosome Classification,
PRL(18), No. 6, June 1997, pp. 525-539. 9710
BibRef

Agam, G., Dinstein, I.,
Geometric Separation of Partially Overlapping Nonrigid Objects Applied to Automatic Chromosome Classification,
PAMI(19), No. 11, November 1997, pp. 1212-1222.
IEEE Abstract. IEEE Top Reference.
WWW Version. 9712
Merge the separation problem and recognition problem. BibRef

Stanley, R.J.[Ronald J.], Keller, J.M.[James M.], Gader, P.D.[Paul D.], Caldwell, C.W.[Charles W.],
Homologue Matching Applications: Recognition of Overlapped Chromosomes,
PAA(1), No. 4 1998, pp. 206-217. BibRef 9800

Stanley, R.J., Keller, J.M., Gader, P.D., Caldwell, C.W.,
Data-Driven Homolog Matching for Chromosome Identification,
MedImg(17), No. 3, June 1998, pp. 451-462.
IEEE Top Reference. 9809
BibRef

Charters, G.C.[Graham C.], Graham, J.[Jim],
Trainable grey-level models for disentangling overlapping chromosomes,
PR(32), No. 8, August 1999, pp. 1335-1349.
WWW Version. BibRef 9908

Ritter, G.[Gunter], Gaggermeier, K.[Karl],
Automatic classification of chromosomes by means of quadratically asymmetric statistical distributions,
PR(32), No. 6, June 1999, pp. 997-1008.
WWW Version. BibRef 9906

Ritter, G.[Gunter], Schreib, G.[Gernot],
Using dominant points and variants for profile extraction from chromosomes,
PR(34), No. 4, April 2001, pp. 923-938.
WWW Version. 0101
BibRef
Earlier:
Profile and Feature Extraction from Chromosomes,
ICPR00(Vol II: 287-290).
IEEE DOI Link
HTML Version. 0009
BibRef

Wang, Y.P.[Yu-Ping], Wu, Q.A.[Qi-Ang], Castleman, K.R., Xiong, Z.X.[Zi-Xiang],
Chromosome image enhancement using multiscale differential operators,
MedImg(22), No. 5, May 2003, pp. 685-693.
IEEE Abstract. IEEE Top Reference. 0307
BibRef

Wang, Y.P.,
Image Representations Using Multiscale Differential Operators,
IP(8), No. 12, December 1999, pp. 1757-1771.
IEEE DOI Link 9912
BibRef

Urdiales García, C.[Cristina], Bandera Rubio, A.[Antonio], Arrebola Pérez, F.[Fabián], Sandoval Hernández, F.[Francisco],
A curvature-based multiresolution automatic karyotyping system,
MVA(14), No. 3, July 2003, pp. 145-156.
WWW Version. 0308
BibRef

Cai, N.[Nian], Hu, K.[Kuanghu], Xiong, H.T.[Hai-Tao], Li, S.Y.[Shu-Yu], Su, W.[Wanfang], Zhu, F.S.[Feng-Sui],
Image segmentation of G bands of Triticum monococcum chromosomes based on the model-based neural network,
PRL(25), No. 3, February 2004, pp. 319-329.
WWW Version. 0401
BibRef

Sampat, M.P., Bovik, A.C., Aggarwal, J.K., Castleman, K.R.,
Supervised parametric and non-parametric classification of chromosome images,
PR(38), No. 8, August 2005, pp. 1209-1223.
WWW Version. 0505
BibRef

Choi, H., Bovik, A.C., Castleman, K.R.,
Feature Normalization via Expectation Maximization and Unsupervised Nonparametric Classification For M-FISH Chromosome Images,
MedImg(27), No. 8, August 2008, pp. 1107-1119.
IEEE DOI Link 0808
BibRef

Choi, H., Castleman, K.R., Bovik, A.C.,
Color Compensation of Multicolor FISH Images,
MedImg(28), No. 1, January 2009, pp. 129-136.
IEEE DOI Link 0901
BibRef
Earlier:
Segmentation and Fuzzy-Logic Classification of M-FISH Chromosome Images,
ICIP06(69-72). 0610

IEEE DOI Link BibRef

Wu, Q., Liu, Z., Chen, T., Xiong, Z., Castleman, K.R.,
Subspace-Based Prototyping and Classification of Chromosome Images,
IP(14), No. 9, September 2005, pp. 1277-1287.
IEEE DOI Link 0508
BibRef

Sage, D., Neumann, F.R., Hediger, F., Gasser, S.M., Unser, M.,
Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics,
IP(14), No. 9, September 2005, pp. 1372-1383.
IEEE DOI Link 0508
BibRef

Moradi, M.[Mehdi], Setarehdan, S.K.[S. Kamaledin],
New features for automatic classification of human chromosomes: A feasibility study,
PRL(27), No. 1, 1 January 2006, pp. 19-28.
WWW Version. 0512
BibRef

Schwartzkopf, W.C., Bovik, A.C., Evans, B.L.,
Maximum-likelihood techniques for joint segmentation-classification of multispectral chromosome images,
MedImg(24), No. 12, December 2005, pp. 1593-1610.
IEEE DOI Link 0601
BibRef

Kao, J.H.[Jau-Hong], Chuang, J.H.[Jen-Hui], Wang, T.P.[Tsai-Pei],
Chromosome classification based on the band profile similarity along approximate medial axis,
PR(41), No. 1, January 2008, pp. 77-89.
WWW Version. 0710
BibRef
Earlier:
Automatic Chromosome Classification Using Medial Axis Approximation and Band Profile Similarity,
ACCV06(II:274-283).
Springer DOI Link 0601
Chromosome classification; Medial axis; Sequence similarity; Sequence matching BibRef

Ritter, G.[Gunter], Gao, L.[Le],
Automatic segmentation of metaphase cells based on global context and variant analysis,
PR(41), No. 1, January 2008, pp. 38-55.
WWW Version. 0710
Automatic chromosome segmentation; Karyotyping; Shape analysis; Context; Variant analysis; Diagnostic classification BibRef

Bandyopadhyay, S., Maulik, U., Roy, D.,
Gene Identification: Classical and Computational Intelligence Approaches,
SMC-C(38), No. 1, January 2008, pp. 55-68.
IEEE DOI Link 0712
BibRef

Legrand, B.[Benoit], Chang, C.S., Ong, S.H., Neo, S.Y.[Soek-Ying], Palanisamy, N.[Nallasivam],
Chromosome classification using dynamic time warping,
PRL(29), No. 3, 1 February 2008, pp. 215-222.
WWW Version. 0801
Chromosome; Karyotype; Feature extraction; Classification; Dynamic time warping BibRef

Karvelis, P.S., Tzallas, A.T., Fotiadis, D.I., Georgiou, I.,
A Multichannel Watershed-Based Segmentation Method for Multispectral Chromosome Classification,
MedImg(27), No. 5, May 2008, pp. 697-708.
IEEE DOI Link 0711
BibRef

Roshtkhari, M.J.[Mehrsan Javan], Setarehdan, S.K.[Seyed Kamaledin],
A novel algorithm for straightening highly curved images of human chromosome,
PRL(29), No. 9, 1 July 2008, pp. 1208-1217.
WWW Version. 0711
Curved chromosomes; Chromosome classification; Projection vectors; Chromosome straightening BibRef

Shah, S.K.[Shishir K.],
Performance Modeling and Algorithm Characterization for Robust Image Segmentation: Robust Image Segmentation,
IJCV(80), No. 1, October 2008, pp. xx-yy.
Springer DOI Link 0809
BibRef
Earlier:
Segmenting Biological Particles in Multispectral Microscopy Images,
WACV07(44-44).
IEEE DOI Link 0702
BibRef
Earlier:
Multispectral Integration for Segmentation of Chromosome Images,
CAIP05(506).
Springer DOI Link 0509
BibRef

Legrand, B., Chang, C.S., Ong, S.H., Neo, S.Y., Palanisamy, N.,
Automated Identification of Chromosome Segments Involved in Translocations by Combining Spectral Karyotyping and Banding Analysis,
SMC-A(38), No. 6, November 2008, pp. 1381-1384.
IEEE DOI Link 0811
BibRef

Ben, N.[Niu], Yang, Q.A.[Qi-Ang], Li, J.[Jinyan], Chi-keung, S.[Shiu], Pal, S.K.[Sankar K.],
Discovering Patterns of DNA Methylation: Rule Mining with Rough Sets and Decision Trees, and Comethylation Analysis,
PReMI07(389-397).
Springer DOI Link 0712
BibRef

Sousa, A.V.[António V.], Mendonça, A.M.[Ana Maria], Campilho, A.[Aurélio], Aguiar, R.[Rui], Miranda, C.S.[C. Sá],
Feature Extraction for Classification of Thin-Layer Chromatography Images,
ICIAR05(974-981).
Springer DOI Link 0509
BibRef

Sousa, A.V.[António V.], Aguiar, R.[Rui], Mendonça, A.M.[Ana Maria], Campilho, A.[Aurélio],
Automatic Lane and Band Detection in Images of Thin Layer Chromatography,
ICIAR04(II: 158-165).
WWW Version. 0409
BibRef

Glory, E., Faure, A., Meas-Yedid, V., Cloppet, F., Pinset, C., Stamon, G., Olivo-Marin, J.C.,
A Quantification Tool to Analyse Stained Cell Cultures,
ICIAR04(II: 84-91).
WWW Version. 0409
BibRef

Gajendran, V., Rodriguez, J.J.,
Chromosome counting via digital image analysis,
ICIP04(V: 2929-2932).
IEEE DOI Link 0505
BibRef

Babu, S.[Sabarish], Liao, P.C.[Pao-Chuan], Shin, M.C.[Min C.], Tsap, L.V.[Leonid V.],
Towards Recovery of 3D Chromosome Structure,
Non-Rigid04(1).
HTML Version. 0502
BibRef

Mousavi, P., Fels, S., Ward, R., Lansdorp, P.,
Classification of Homologous Human Chromosomes Using Mutual Information Maximization,
ICIP01(II: 845-848).
IEEE Abstract. IEEE Top Reference. 0108
BibRef

Schwartzkopf, W., Evans, B.L., Bovik, A.C.,
Entropy estimation for segmentation of multi-spectral chromosome images,
Southwest02(234-237).
IEEE Top Reference. 0208
BibRef

Schwartzkopf, W., Evans, B.L., Bovik, A.C.,
Minimum Entropy Segmentation Applied to Multi-spectral Chromosome Images,
ICIP01(II: 865-868).
IEEE Abstract. IEEE Top Reference. 0108
BibRef

Mousavi, P., Ward, R.,
Multi-feature Analysis and Classification of Human Chromosome Images Using Centromere Segmentation Algorithms,
ICIP00(Vol I: 152-155).
IEEE Abstract. IEEE Top Reference. 0008
BibRef

Kyan, M.[Matthew], Guan, L.[Ling], Arnison, M.[Matthew], Cogswell, C.[Carol],
Feature Extraction of Chromosomes from 3D Confocal Microscope images,
ICIP99(II:843-847).
IEEE Abstract. IEEE Top Reference. BibRef 9900

Karsligil, M.E.[M. Elif], Karsligil, M.Y.[M. Yahya],
Fuzzy Similarity Relations for Chromosome Classification and Identification,
CAIP99(142-148).
WWW Version. 9909
BibRef

Turmon, M., and Mukhtar, S.,
Recognizing Chromospheric Objects via Markov Chain Monte Carlo,
ICIP97(III: 320-323).
IEEE DOI Link BibRef 9700

Eskiizmirliler, S., Erkmen, A.M., Basaran, F., Nur Cakar, A.,
A hybrid intelligent diagnostic system based on neural networks and image analysis techniques in the field of automated cytogenetics,
ICIP96(I: 315-318).
IEEE DOI Link 9610
BibRef

Lerner, B., Guterman, H., Dinstein, I., Romem, Y.,
Feature selection and learning curves of a multilayer perceptron chromosome classifier,
ICPR94(B:497-499).
IEEE DOI Link 9410
BibRef

Wiffen, L.N., Kent, J.T.,
The automatic classification of normal and abnormal chromosomes using image analysis,
CAIP93(693-697).
Springer DOI Link 9309
BibRef

Turner, M., Austin, J., Allinson, N.M., Thompson, P.,
Matching an Elastic Model of Chromosomal Shape to Features on a Self-Organising Map,
BMVC93(xx-yy).
PDF Version. 9309
BibRef

Turner, M., Austin, J., Allinson, N.M., Thompson, P.,
A Neural Network Approach to Recognition of Structural Aberrations in Chromosomes,
BMVC92(xx-yy).
PDF Version. 9209
BibRef

He, L.[Liang], Chai, Z.M.[Zhen-Ming],
Automatic detection of sister chromatid exchange,
ICPR88(II: 652-654).
IEEE DOI Link 8811
BibRef

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Extraction and Analysis of Cells .