20.4.1.1 Cell Nucleus, Cell Nuclei Analysis, Detection

Ott, R., Schürmann, J., Reinhardt, E.R., Bloss, W.H.,
Automated classification of cytological specimens based on features extracted from nuclei images,
PR(13), No. 1, 1981, pp. 83-87.
WWW Version. 0309
BibRef

Bamford, P.[Pascal], Lovell, B.C.[Brian C.],
Unsupervised cell nucleus segmentation with active contours,
SP(71), No. 2, 15 December 1998, pp. 203-213. BibRef 9812
Earlier:
Bayesian Analysis of Cell Nucleus Segmentation by a Viterbi Search Based Active Contour,
ICPR98(Vol I: 133-135).
IEEE DOI Link 9808
BibRef
And:
Improving the Robustness of Cell Nucleus Segmentation,
BMVC98(xx-yy). BibRef

Yang, S., Kohler, D., Teller, K., Cremer, T., Le Baccon, P., Heard, E., Eils, R., Rohr, K.,
Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei,
IP(17), No. 4, April 2008, pp. 493-499.
IEEE DOI Link 0803
BibRef

Kim, I.H., Chen, Y.C.M., Spector, D.L., Eils, R., Rohr, K.,
Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion,
IP(20), No. 4, April 2011, pp. 1011-1022.
IEEE DOI Link 1103
BibRef

McCullough, D.P., Gudla, P.R., Harris, B.S., Collins, J.A., Meaburn, K.J., Nakaya, M.A., Yamaguchi, T.P., Misteli, T., Lockett, S.J.,
Segmentation of Whole Cells and Cell Nuclei From 3-D Optical Microscope Images Using Dynamic Programming,
MedImg(27), No. 5, May 2008, pp. 723-734.
IEEE DOI Link 0711
BibRef

Yu, D.G.[Dong-Gang], Pham, T.D.[Tuan D.], Zhou, X.B.[Xiao-Bo], Wong, S.T.C.[Stephen T.C.],
Recognition and analysis of cell nuclear phases for high-content screening based on morphological features,
PR(42), No. 4, April 2009, pp. 498-508.
Elsevier DOI Link
WWW Version. 0812
Nuclei phases; Cell screening; Feature extraction; Morphological feature; Feed-forward detection; Feed-back detection; Shape recognition; Normal cellular cycle BibRef

Cloppet, F., Boucher, A.,
Segmentation of complex nucleus configurations in biological images,
PRL(31), No. 8, 1 June 2010, pp. 755-761.
Elsevier DOI Link
WWW Version. 1004
BibRef
Earlier:
Segmentation of overlapping/aggregating nuclei cells in biological images,
ICPR08(1-4).
IEEE DOI Link 0812
Nucleus segmentation; Prior information; Watershed-based segmentation; Biomedical imaging BibRef

Quelhas, P., Marcuzzo, M., Mendonca, A.M., Campilho, A.,
Cell Nuclei and Cytoplasm Joint Segmentation Using the Sliding Band Filter,
MedImg(29), No. 8, August 2010, pp. 1463-1473.
IEEE DOI Link 1008
BibRef

Quelhas, P.[Pedro], Mendonca, A.M.[Ana Maria], Campilho, A.[Aurelio],
3D Cell Nuclei Fluorescence Quantification Using Sliding Band Filter,
ICPR10(2508-2511).
IEEE DOI Link 1008
BibRef

Marcuzzo, M.[Monica], Quelhas, P.[Pedro], Mendonça, A.M.[Ana Maria], Campilho, A.[Aurélio],
Evaluation of Symmetry Enhanced Sliding Band Filter for Plant Cell Nuclei Detection in Low Contrast Noisy Fluorescent Images,
ICIAR09(824-831).
Springer DOI Link 0907
BibRef

Carleos, C.[Carlos], López-Díaz, M.C.[M. Concepción], López-Díaz, M.[Miguel],
A Stochastic Order of Shape Variability with an Application to Cell Nuclei Involved in Mastitis,
JMIV(38), No. 2, October 2010, pp. 95-107.
WWW Version. 1011
BibRef

Huh, S., Ker, D.F.E., Bise, R., Chen, M., Kanade, T.,
Automated Mitosis Detection of Stem Cell Populations in Phase-Contrast Microscopy Images,
MedImg(30), No. 3, March 2011, pp. 586-596.
IEEE DOI Link 1103
BibRef

Liu, A.A., Li, K., Kanade, T.,
A Semi-Markov Model for Mitosis Segmentation in Time-Lapse Phase Contrast Microscopy Image Sequences of Stem Cell Populations,
MedImg(31), No. 2, February 2012, pp. 359-369.
IEEE DOI Link 1202
BibRef

Huh, S.[Seungil], Chen, M.[Mei],
Detection of mitosis within a stem cell population of high cell confluence in phase-contrast microscopy images,
CVPR11(1033-1040).
IEEE DOI Link 1106
BibRef

Plissiti, M.E.[Marina E.], Nikou, C.[Christophoros], Charchanti, A.[Antonia],
Combining shape, texture and intensity features for cell nuclei extraction in Pap smear images,
PRL(32), No. 6, 15 April 2011, pp. 838-853.
Elsevier DOI Link
WWW Version. 1103
Cell nuclei segmentation; Pap smear images; Morphological reconstruction; Watersheds; Feature selection; Clustering BibRef

Wang, W., Ozolek, J.A., Slepcev, D., Lee, A.B., Chen, C., Rohde, G.K.,
An Optimal Transportation Approach for Nuclear Structure-Based Pathology,
MedImg(30), No. 3, March 2011, pp. 621-631.
IEEE DOI Link 1103
BibRef

Han, J.W.[Ji Wan], Breckon, T.P.[Toby P.], Randell, D.A.[David A.], Landini, G.[Gabriel],
The application of support vector machine classification to detect cell nuclei for automated microscopy,
MVA(23), No. 1, January 2012, pp. 15-24.
WWW Version. 1201
BibRef

Zhang, C.[Chao], Sun, C.M.[Chang-Ming], Pham, T.D.,
Clustered Nuclei Splitting Using Curvature Information,
DICTA11(352-357).
IEEE DOI Link 1205
BibRef

Ibba, A.[Alessandro], Duin, R.P.W.[Robert P.W.], Loog, M.[Marco],
Supervised localization of cell nuclei on TMA images,
MMBIA12(4321-4327).
IEEE DOI Link 1203
BibRef

Hammoudi, A.A.[Ahmad A.], Li, F.[Fuhai], Gao, L.[Liang], Wang, Z.Y.[Zhi-Yong], Thrall, M.J.[Michael J.], Massoud, Y.[Yehia], Wong, S.T.C.[Stephen T. C.],
Automated Nuclear Segmentation of Coherent Anti-Stokes Raman Scattering Microscopy Images by Coupling Superpixel Context Information with Artificial Neural Networks,
MLMI11(317-325).
Springer DOI Link 1109
BibRef

Schüffler, P.[Peter], Ulas, A.[Aydin], Castellani, U.[Umberto], Murino, V.[Vittorio],
A Multiple Kernel Learning Algorithm for Cell Nucleus Classification of Renal Cell Carcinoma,
CIAP11(I: 413-422).
Springer DOI Link 1109
BibRef

Xia, C.[Cong], Chen, J.S.[Jian-Sheng], Hu, C.H.[Chun-Hua], Su, G.D.[Guang-Da], Hao, H.W.[Hong-Wei], Ma, Y.[Yu],
Segmenting the Subthalamic Nucleus Using Narrow Band Limited Variational Level Set Method,
ICIG11(372-376).
IEEE DOI Link 1109
BibRef

Malon, C.[Christopher], Cosatto, E.[Eric],
Dynamic Radial Contour Extraction by Splitting Homogeneous Areas,
CAIP11(I: 269-277).
Springer DOI Link 1109
Radial contour around a point, e.g. cell nucleus. BibRef

Keuper, M.[Margret], Schmidt, T.[Thorsten], Padeken, J.[Jan], Heun, P.[Patrick], Palme, K.[Klaus], Burkhardt, H.[Hans], Ronneberger, O.[Olaf],
3D Deformable Surfaces with Locally Self-Adjusting Parameters: A Robust Method to Determine Cell Nucleus Shapes,
ICPR10(2254-2257).
IEEE DOI Link 1008
BibRef

Zhang, J.[Jun], Hu, J.L.[Jing-Lu],
Nuclei Extraction Based on Multi-channel Information,
DICTA08(59-64).
IEEE DOI Link 0812
BibRef

Keuper, M.[Margret], Padeken, J.[Jan], Heun, P.[Patrick], Burkhardt, H.[Hans], Ronneberger, O.[Olaf],
A 3D Active Surface Model for the Accurate Segmentation of Drosophila Schneider Cell Nuclei and Nucleoli,
ISVC09(I: 865-874).
Springer DOI Link 0911
BibRef

Maška, M.[Martin], Danek, O.[Ondrej], Ortiz-de-Solórzano, C.[Carlos], Muñoz-Barrutia, A.[Arrate], Kozubek, M.[Michal], García, I.F.[Ignacio Fernández],
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms,
SCIA09(390-399).
Springer DOI Link 0906
BibRef

Danek, O.[Ondrej], Matula, P.[Pavel],
An Improved Riemannian Metric Approximation for Graph Cuts,
DGCI11(71-82).
Springer DOI Link 1104
BibRef

Danek, O.[Ondrej], Matula, P.[Pavel], Ortiz-de-Solórzano, C.[Carlos], Muñoz-Barrutia, A.[Arrate], Maška, M.[Martin], Kozubek, M.[Michal],
Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model,
SCIA09(410-419).
Springer DOI Link 0906
BibRef

Hafiane, A.[Adel], Bunyak, F.[Filiz], Palaniappan, K.[Kannappan],
Clustering initiated multiphase active contours and robust separation of nuclei groups for tissue segmentation,
ICPR08(1-4).
IEEE DOI Link 0812
BibRef

Boucheron, L.E.[Laura E.], Harvey, N.R.[Neal R.], Manjunath, B.S.,
A Quantitative Object-Level Metric for Segmentation Performance and Its Application to Cell Nuclei,
ISVC07(I: 208-219).
Springer DOI Link 0711
BibRef

Palacios, G.[Guillermo], Beltran, J.R.[Jose R.],
Cell Nuclei Segmentation Combining Multiresolution Analysis, Clustering Methods and Colour Spaces,
IMVIP07(91-97).
IEEE DOI Link 0709
BibRef

Siva, P.[Parthipan], Brodland, G.W.[G. Wayne], Clausi, D.A.[David A.],
Automated Detection of Mitosis in Embryonic Tissues,
CRV07(97-104).
IEEE DOI Link 0705
BibRef

Schulz, J.[Janina], Schmidt, T.[Thorsten], Ronneberger, O.[Olaf], Burkhardt, H.[Hans], Pasternak, T.[Taras], Dovzhenko, A.[Alexander], Palme, K.[Klaus],
Fast Scalar and Vectorial Grayscale Based Invariant Features for 3D Cell Nuclei Localization and Classification,
DAGM06(182-191).
Springer DOI Link 0610
BibRef

Restif, C.[Christophe],
Towards Safer, Faster Prenatal Genetic Tests: Novel Unsupervised, Automatic and Robust Methods of Segmentation of Nuclei and Probes,
ECCV06(IV: 437-450).
Springer DOI Link 0608
BibRef

Gurevich, I.[Igor], Kharazishvili, D.[Dmitry], Jernova, I.[Irina], Khilkov, A.[Andrei], Nefyodov, A.V.[Alexey V.], Vorobjev, I.[Ivan],
Information Technology for the Morphological Analysis of the Lymphoid Cell Nuclei,
SCIA03(541-548).
WWW Version. 0310
BibRef

Hu, M.[Min], Ping, X.[Xijian], Ding, Y.H.[Yi-Hong],
A new active contour model and its application on cell segmentation,
ICARCV04(II: 1104-1107).
IEEE DOI Link 0412
BibRef
And:
Automated cell nucleus segmentation using improved snake,
ICIP04(IV: 2737-2740).
IEEE DOI Link 0505
BibRef

Begelman, G., Gur, E., Rivlin, E., Radzsky, M., Zalevsky, Z.,
Cell nuclei segmentation using fuzzy logic engine,
ICIP04(V: 2937-2940).
IEEE DOI Link 0505
BibRef

Clocksin, W.F.,
Automatic segmentation of overlapping nuclei with high background variation using robust estimation and flexible contour models,
CIAP03(682-687).
IEEE Abstract. 0310
BibRef

Bengtsson, E.[Ewert],
Computerized Cell Image Analysis: Past, Present, and Future,
SCIA03(395-407).
WWW Version. 0310
BibRef

Wählby, C.[Carolina], Bengtsson, E.[Ewert],
Segmentation of Cell Nuclei in Tissue by Combining Seeded Watersheds with Gradient Information,
SCIA03(408-414).
WWW Version. 0310
BibRef

Netten, H., Young, I.T., Prins, M., van Vliet, L.J., Tanke, H., Vrolijk, H., Sloos, W.,
Automation of fluorescent dot counting in cell nuclei,
ICPR94(A:84-87).
IEEE DOI Link 9410
BibRef

Strasters, K.C., Smeulders, A.W.M., van der Voort, H.T.M., Young, I.T., Nanninga, N.,
Quantitative 3-D texture analysis of interphase cell nuclei,
ICPR92(III:767-770).
IEEE DOI Link 9208
BibRef

O'Gorman, L., Sanderson, A.C., Preston, Jr., K., and Dekker, A.,
Image Segmentation and Nucleus Classification for Automated Tissue Section Analysis,
CVPR83(89-94). BibRef 8300

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Extraction and Analysis of Cells .